CruiseCheckeR: Cruise data check via R
In dmwarn/CruiseCheckeR: Provide Tools to Evaluate Data Quality

Description Usage Arguments Details Value

View source: R/CruiseCheckeR.R

Cruise data check via R

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CruiseCheckeR(dat.source = "csv", year = 2018, lake = 2,
  vessel = 17, cruise = c(1, 2, 3, 4, 5, 6, 7), target = 1,
  stype = 1, username = "", password = "", dbname = "")

`dat.source`	This determines if the function should operate on local csv files or the results of database queries. If 'database', the user will be prompted to provide username, password, and dbname, which in the case of the Great Lakes Science Center, should be GLSC.
`year`	Character vector, year value in quotes. Provides information about the year, which is used in maming output files.
`lake`	Character vector. For example, "Michigan". Provides information about location which is used in naming output files.
`target`	Numeric vector representing the study or study type. For example, target = c(209) would return data collected during the Lake Michigan LWAP fall acoustic survey.
`stype`	Numeric vector representing the type of sample data to be evaluated. For example, SAMPLE_TYPE (stype) = 1 for trawl data. Currently only functional for stype = 1.
`username`	Character vector. This is the username required to access the database, if required.
`password`	Password for database access.
`dbname`	Name of the data source. If using DBI, it should be GLSC.

The purpose of this function is to create tables and plots to help the user evaluate the consistency, completeness, and accuracy of data that are either in an Oracle database or are being prepared for appending to an Oracle database. Currently the functionality is limited to data and data structures that match those of the Research Vessel Catch database developed by the USGS Great Lakes Science Center, which is used for storing data collected during a wide variety of both field and laboratory sampling exercises. More specifically, the current iteration ONLY works with trawl data. Future developments could add other sample types.

Generates an html file with various plots and checks of data consistency, accuracy, and completeness.

dmwarn/CruiseCheckeR documentation built on Oct. 11, 2020, 9:56 p.m.