Example_1: An example contaminated OTU table

In donaldtmcknight/microDecon: A package for removing contaminant sequencing reads from metabarcoding studies

An example contaminated OTU table

Description

An OTU table containing data for three blanks, three samples (individuals from a single population), and taxa, formatted for microDecon. OTU2 is present as both contamination and actual reads, whereas OTUs 3, 4, and 6 are entirely contamination

Usage

Example_1

Format

A data frame with 6 rows and 8 variables:

OTU_ID

column of unique OTU IDs

Blank1

reads from Blank 1

Blank2

reads from Blank 2

Blank3

reads from Blank 3

Ind1

reads from individual 1

Ind2

reads from individual 2

Ind3

reads from individual 3

taxa

taxonomic information

Source

in silico data

donaldtmcknight/microDecon documentation built on Oct. 23, 2023, 10:57 a.m.