Example_2: An example contaminated OTU table

In donaldtmcknight/microDecon: A package for removing contaminant sequencing reads from metabarcoding studies

An example contaminated OTU table

Description

An OTU table containing data for one blank and 10 samples (six individuals from one population and four from another), formatted for microDecon. OTU2 is actually present on samples in group 1 (but not group 2), and OTU4 is actually present in group 2 (but not group 1). OTUs 3 and 6 are entirely contamination.

Usage

Example_2

Format

A data frame with 6 rows and 8 variables:

OTU_ID

column of unique OTU IDs

Blank

reads from the blank

Ind1

reads from individual 1 (population 1)

Ind2

reads from individual 2 (population 1)

Ind3

reads from individual 3 (population 1)

Ind4

reads from individual 4 (population 1)

Ind5

reads from individual 5 (population 1)

Ind6

reads from individual 6 (population 1)

Ind7

reads from individual 7 (population 2)

Ind8

reads from individual 8 (population 2)

Ind9

reads from individual 9 (population 2

Ind10

reads from individual 10 (population 2)

Source

in silico data

donaldtmcknight/microDecon documentation built on Oct. 23, 2023, 10:57 a.m.