optimize_epoch: run one epoch of the umap optimization

Description Usage Arguments

View source: R/RcppExports.R

Description

run one epoch of the umap optimization

Usage

1
optimize_epoch(embedding, pairs, adjust, nns, abg, alpha)

Arguments

embedding

matrix with embedding coordinates (coordinates along columns)

pairs

matrix with rows: from to; indexes must be 0-based

adjust

vector with 0/1 whether to adjust or not

nns

vector with negative-neighbors-set size

abg

vector with configuration parameters, a, b, gamma, move_other

alpha

numeric learning rate for this epoch

book

matrix with columns: eps, epns, eon2s, eons, nns (in that order)


donelsonsmith/umap_R documentation built on Nov. 4, 2019, 10:58 a.m.