Files in dongjunchung/dpeak
dPeak (Deconvolution of Peaks in ChIP-seq Analysis)
.gitignore
DESCRIPTION
NAMESPACE
R/AllClasses.R
R/AllGenerics.R
R/base_bg_SET.R
R/base_combineModelPET.R
R/base_combineModelSET.R
R/base_constructExtRead.R
R/base_cpp_call.R
R/base_deconCorePET.R
R/base_deconCoreSET.R
R/base_deconInitPET.R
R/base_deconInitSET.R
R/base_deconWrapper.R
R/base_export.R
R/base_generateFragment.R
R/base_lineStrandData.R
R/base_loglikPET.R
R/base_loglikSET.R
R/base_plotBIC.R
R/base_plotFit.R
R/base_plotGOF.R
R/base_plotStrandData.R
R/base_selectModel.R
R/base_stackFragment.R
R/dpeakFit.R
R/dpeakMotif.R
R/dpeakRead.R
R/methods_DpeakData.R
R/methods_DpeakFit.R
R/methods_DpeakMotif.R
README.md
_config.yml
data/exampleData.RData
inst/Perl/extract_coord_PET.pl
inst/Perl/extract_coord_SET.pl
inst/doc/GOF.eps
inst/doc/GOF.pdf
inst/doc/dataplot_combined.eps
inst/doc/dataplot_combined.pdf
inst/doc/dataplot_strand.eps
inst/doc/dataplot_strand.pdf
inst/doc/dpeak-example.Rnw
inst/doc/dpeak-example.pdf
inst/doc/examplePeak.txt
inst/doc/resultplot_combined.eps
inst/doc/resultplot_combined.pdf
inst/doc/resultplot_strand.eps
inst/doc/resultplot_strand.pdf
man/DpeakData-class.Rd
man/DpeakFit-class.Rd
man/DpeakMotif-class.Rd
man/dpeak-internal.Rd
man/dpeak-package.Rd
man/dpeakFit.Rd
man/dpeakMotif.Rd
man/dpeakRead.Rd
man/exampleData.Rd
man/export.Rd
man/printEmpty.Rd
src/Makevars
src/Makevars.win
src/dlength.cpp
src/fraglen.cpp
src/ismaxZ0.cpp
src/normalize.cpp
src/samp.cpp
src/score.cpp
src/stack.cpp
src/symbols.rds
