MosaicsFitParam-class: Class "MosaicsFitParam"

In dongjunchung/mosaics: MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)

Description

This class represents parameters for mosaicsFit function.

Objects from the Class

Objects can be created by calls of the form new("MosaicsFitParam", ...).

Slots

k:

Object of class "numeric", representing a parameter for mosaicsFit function.

meanThres:

Object of class "numeric", representing a parameter for mosaicsFit function.

s:

Object of class "numeric", representing a parameter for mosaicsFit function.

d:

Object of class "numeric", representing a parameter for mosaicsFit function.

Author(s)

Dongjun Chung, Pei Fen Kuan, Rene Welch, Sunduz Keles

References

Kuan, PF, D Chung, G Pan, JA Thomson, R Stewart, and S Keles (2011), "A Statistical Framework for the Analysis of ChIP-Seq Data", Journal of the American Statistical Association, Vol. 106, pp. 891-903.

Chung, D, Zhang Q, and Keles S (2014), "MOSAiCS-HMM: A model-based approach for detecting regions of histone modifications from ChIP-seq data", Datta S and Nettleton D (eds.), Statistical Analysis of Next Generation Sequencing Data, Springer.

See Also

mosaicsFit.

Examples

showClass("MosaicsFitParam")

dongjunchung/mosaics documentation built on March 1, 2020, 3:44 a.m.