API for dongjunchung/mosaics
MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)

Global functions
.adapGridMosaicsZ0_IO Man page
.adapGridMosaicsZ0_OS Man page
.adapGridMosaicsZ0_TS Man page
.calMDZ1_2S Man page
.calcModelBIC Man page
.calcPN Man page
.computeStat Man page
.eStepZ1_2S Man page
.emZ1_2S Man page
.exportBED Man page
.exportGFF Man page
.exportTXT Man page
.getPH_1S Man page
.getPH_2S Man page
.getParamZ0 Man page
.getPi0 Man page
.mStepZ1_2S Man page
.margDistZ1_1S Man page
.margDistZ1_2S Man page
.margDist_1S Man page
.margDist_2S Man page
.mosaicsFit_IO Man page
.mosaicsFit_OS Man page
.mosaicsFit_TS Man page
.mosaicsZ0_IO Man page
.mosaicsZ0_OS Man page
.mosaicsZ0_TS Man page
.mosaicsZ1_1S Man page
.mosaicsZ1_2S Man page
.peakCall Man page
.plotGOF Man page
.processBin_MGC Man page
.processBin_MGCX Man page
.processBin_X Man page
.reportSummary Man page
.rlmFit_IO Man page
.rlmFit_OS Man page
.rlmFit_TS Man page
.validDataType Man page
.validLocation Man page
.validType Man page
BinData-class Man page
MosaicsFit-class Man page
MosaicsFitEst-class Man page
MosaicsFitParam-class Man page
MosaicsHMM-class Man page
MosaicsPeak-class Man page
MosaicsPeakParam-class Man page
TagData-class Man page
adjustBoundary Man page
adjustBoundary,MosaicsPeak-method Man page
bdBin Man page
bdBin,MosaicsPeak-method Man page
chrID Man page
chrID,BinData-method Man page
constructBins Man page
conv_1S Man page
conv_2S Man page
coord Man page
coord,BinData-method Man page
empFDR Man page
empFDR,MosaicsPeak-method Man page
estimates Man page
estimates,MosaicsFit-method Man page
estimates,MosaicsHMM-method Man page
export Man page
export,MosaicsPeak-method Man page Man page
extractReads Man page
extractReads,MosaicsPeak-method Man page
filterPeak Man page
filterPeak,MosaicsPeak-method Man page
findSummit Man page
findSummit,MosaicsPeak-method Man page
gcContent Man page
gcContent,BinData-method Man page
generateWig Man page
input Man page
input,BinData-method Man page
mappability Man page
mappability,BinData-method Man page
mosaics Man page
mosaics-package Man page
mosaicsFit Man page
mosaicsFit,BinData-method Man page Man page
mosaicsFitHMM Man page
mosaicsFitHMM,MosaicsFit-method Man page
mosaicsPeak Man page
mosaicsPeak,MosaicsFit-method Man page
mosaicsPeakHMM Man page
mosaicsPeakHMM,MosaicsHMM-method Man page
mosaicsRunAll Man page
plot,BinData,missing-method Man page
plot,MosaicsFit,ANY-method Man page
plot,MosaicsHMM,missing-method Man page
plot,MosaicsPeak,missing-method Man page
postProb Man page
postProb,MosaicsPeak-method Man page
print,BinData-method Man page
print,MosaicsFit-method Man page
print,MosaicsHMM-method Man page
print,MosaicsPeak-method Man page
read Man page
read,MosaicsPeak-method Man page
readBins Man page
readCoverage Man page
readCoverage,MosaicsPeak-method Man page
seqDepth Man page
seqDepth,BinData-method Man page
seqDepth,MosaicsFit-method Man page
seqDepth,MosaicsHMM-method Man page
seqDepth,MosaicsPeak-method Man page
show,BinData-method Man page
show,MosaicsFit-method Man page
show,MosaicsHMM-method Man page
show,MosaicsPeak-method Man page
tagCount Man page
tagCount,BinData-method Man page
dongjunchung/mosaics documentation built on May 15, 2019, 10:40 a.m.