coef-FitGene-method | SPLS coefficient estimates for genes |
coef-FitPath-method | LASSO coefficient estimates for pathways |
FitGene-class | An S4 class to represent gene-level analysis results |
FitPath-class | An S4 class for pathway-level analysis results |
prefilter | prefilter function |
Prefiltered-class | An S4 class to represent pre-filtered data. |
selectGene-methods | Gene selection using SPLS model |
selectPath-methods | pathway selection using LASSO |
show-FitGene-method | Summary of selectGene results |
show-FitPath-method | Summary of selectPath results |
show-Prefiltered-method | Prefiltering summary |
TCGA | TCGA data |
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