FMD_2001: Foot-and-Mouth Disease outbreak (2001)
In donkeyshot/phybreak: Analysis of Outbreaks with Sequence Data
Description
Usage
Format
References
Description
DNA nucleotide patterns and sampling days of FMD virus from 15 farms in the UK. The nucleotides per sample
are not ordered as a virus sequence, but do contain the correct numbers of each nucleotide.
Usage
1
Format
A matrix with 15 rows (one per farm) and 8196 column (one per nucleotide); the names contain sampling days
References
Cottam et al. (2008)
Integrating genetic and epidemiological data to determine transmission pathways
of foot-and-mouth disease virus. Proc R Soc B, 275: 887-895.
donkeyshot/phybreak documentation built on Sept. 17, 2021, 9:32 p.m.
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Description Usage Format References
Description
DNA nucleotide patterns and sampling days of FMD virus from 15 farms in the UK. The nucleotides per sample are not ordered as a virus sequence, but do contain the correct numbers of each nucleotide.
Usage
1 |
Format
A matrix with 15 rows (one per farm) and 8196 column (one per nucleotide); the names contain sampling days
References
Cottam et al. (2008) Integrating genetic and epidemiological data to determine transmission pathways of foot-and-mouth disease virus. Proc R Soc B, 275: 887-895.
R Package Documentation
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