humanorang: Pariwise alignment of 12S rRNA gene of human and orangutan
In dosreislab/simplephy: A simple package for Bayesian phylogenetic analysis

Pairwise alignment of the 12S rRNA gene of the mitochondrial genomes of human and orangutan. The alignment is compressed into site patterns, suitable for analysis under the JC69 and K80 models of nucleotide substitution. See Table 1.3 in Yang (2014).

1	humanorang

humanorang is a list with elements n, the number of sites in the alignment; ns, the number of transitional differences between the two species; nv, the number of transversional differences; and x the total number of differences (x = ns + nv).

Yang Z (2014) Molecular evolution: A Statistical approach, Oxford University Press.

dosreislab/simplephy documentation built on May 11, 2019, 7:27 p.m.