plot.diversity_test: Plot the result of a diversity test (alpha or gamma)

In douglasgscofield/dispersalDiversity: Analyse individual and genetic diversity of dispersal processes in biological populations

Description

Plot an object of class diversity_test, the result of alphaDiversityTest, alphaContrastTest, alphaContrastTest3, gammaContrastTest and gammaContrastTest3.

Usage

## S3 method for class 'diversity_test'
plot(x, breaks = 50, compress.x = TRUE,
  compress.ratio = 1.2, xlab = "ln(LR) value", ylab = "Frequency",
  main = x$method, legend.text = "Observed ln(LR) = ",
  digits = getOption("digits"), ...)

Arguments

x	Object of class diversity_test, returned by alphaDiversityTest, alphaContrastTest, alphaContrastTest3, gammaContrastTest and gammaContrastTest3
breaks	Number of breaks to use when plotting the histogram of the empirical distribution, passed to hist(..., plot = FALSE)
compress.x	Logical, if TRUE and the observed value is more than compress.ratio times the maximum value of the empirical distribution, the x-axis is compressed to include the observed value
xlab, ylab, main	Labels added to the plot
legend.text	Text to use when printing legend containing the observed value in the upper right of the plot. Set to NULL to suppress printing the legend.
digits	Number of significant digits to use when printing numeric values
compress.ration	See compress.x

Note

The method used to compress the x-axis when observed values greatly exceed the empirical distribution has not been well thought through.

See Also

alphaDiversityTest, alphaContrastTest, alphaContrastTest3, gammaContrastTest, gammaContrastTest3

douglasgscofield/dispersalDiversity documentation built on March 30, 2021, 9:50 a.m.