Man pages for dp3ll1n/SLCDP
Simulation and inference of cell differentiation process governed by logistic growth dynamics
| calculateCountsPred | Extract first order moments values from ODEs solutions |
| calculateJ | Calculate the Jacobian matrix |
| calculatePred | Calculate the solution of the ODEs |
| calculateW1Inv | Calculate the global block diagonale covariance matrix... |
| calcW | Calculate covariance matrix |
| diagXCalc | Calculate the D(Xt) by combining the cell types counts... |
| dXCalc | Calculate the differences in cell counts among consecutive... |
| endValuesColVec | Extract clones observations at time points t= 1 .. n. |
| generateOdeFormula | Generate SLCDP ODE formulas for moments evolution. |
| initialValues1_2ODEsCalc | Calculate the starting values for moments ODEs. |
| mXCalc | Calculate the linear predictor matrix M for the local linear... |
| named_rec | Evaluate ODEs solution at given time observation from ODEs. |
| netEffectMatrixCalc | Generate the net effect matrix for the SLCDP. |
| runOptimizationCplex | Calculate the solution for the Quadratic Programming (QP)... |
| runOptimizationOptiSolve | Calculate the solution for the Quadratic Programming (QP)... |
| secOrdMoments | Combination for second order moments |
| setConstraintsCplex | Create a list containing rates constraints and bounds for the... |
| setConstraintsOptiSolve | Create a list containing rates constraints and bounds for the... |
| startValues | Extract clones observations at time points t= 0 .. (n-1). |
