setConstraintsCplex: Create a list containing rates constraints and bounds for the...

In dp3ll1n/SLCDP: Simulation and inference of cell differentiation process governed by logistic growth dynamics

Description

It initializes and stores constraints and bounds for each individual rates. By default, given ncell, it sets all reates to be non-negative, exept for differentiation rates matrix main diagonal elements set to 0. Using this function it is possible to set specific rates to fixed values (non-negative).

Usage

setConstraintsCplex(
  ncell,
  duplRatesLB = NA,
  duplRatesUB = NA,
  deathRatesLB = NA,
  deathRatesUB = NA,
  diffRatesLB = NA,
  diffRatesUB = NA
)

Arguments

ncell	The number of cell types over which the process evolves.
duplRatesLB	duplRatesUB deathRatesLB deathRatesUB Vectors of length ncell containing duplication (dupl) and death (death) rates upper- (UB) and lower- (LB) bounds.
diffRatesLB	diffRatesUB Matrix of size ncell x ncell containing differentiation rates upper- (UB) and lower- (LB) bounds.

Value

List with A, (inequality constraints),lb (lower bound), ub (upper bound).

Examples

setConstraintsCplex(ncell,duplRatesLB=NA,duplRatesUB=NA,deathRatesLB=NA,deathRatesUB=NA,diffRatesLB=NA,diffRatesUB=NA)

dp3ll1n/SLCDP documentation built on Feb. 6, 2021, 9:17 p.m.