reorder_genes: Reorder genes in a ClusterSet object.

In dputhier/dbfmcl: The scigenex package (Single-Cell Informative GENe Explorer)

Reorder genes in a ClusterSet object.

Description

Reorder genes in a ClusterSet object according to various ordering rules.

Usage

reorder_genes(
  object = NULL,
  order_by = NULL,
  method = NULL,
  link = NULL,
  nb_proc = 2
)

Arguments

object	A ClusterSet object.
order_by	A character string specifying the ordering rule. Default is "gene_names" which reorder genes in alphanumerical order. If 'hclust', hierarchical clustering is applied. If 'correlation' the gene as ordered based on there similarity with the cluster center.
method	The distance measure to be used order_by=='hclust'.
link	The agglomeration method to be used if order_by=='hclust'.
nb_proc	The number of processor to be used if order_by=='hclust'.

Value

ClusterSet-class object

dputhier/dbfmcl documentation built on May 31, 2024, 8:57 a.m.