top_genes: Most co-expressed genes from each gene cluster

In dputhier/dbfmcl: The scigenex package (Single-Cell Informative GENe Explorer)

Most co-expressed genes from each gene cluster

Description

Extract the most highly co-expressed genes of each gene cluster.

Usage

top_genes(object, top = 20, fast = FALSE, distance_method = NULL)

Arguments

object	A ClusterSet object.
top	A value for the number of genes to select from each cluster.
fast	Use qlcMatrix::corSparse for pearson computation. Default to cor(). Default to FALSE for retro-compatibility.
distance_method	Overright the object distance_method (slot parameters$distance_method). Useful when object was created using cluster_set_from_matrix() for instance. One of c("kendall", "spearman", "cosine", "euclidean", "pearson") or NULL.

Value

A ClusterSet object.

dputhier/dbfmcl documentation built on April 17, 2025, 4:41 a.m.