getGrowthCurves: Get growth curves giving weight as a function of age

In drfinlayscott/mizer: Dynamic Multi-Species Size Spectrum Modelling

Get growth curves giving weight as a function of age

Description

Get growth curves giving weight as a function of age

Usage

getGrowthCurves(object, species = NULL, max_age = 20, percentage = FALSE)

Arguments

object	MizerSim or MizerParams object. If given a MizerSim object, uses the growth rates at the final time of a simulation to calculate the size at age. If given a MizerParams object, uses the initial growth rates instead.
species	The species to be selected. Optional. By default all target species are selected. A vector of species names, or a numeric vector with the species indices, or a logical vector indicating for each species whether it is to be selected (TRUE) or not.
max_age	The age up to which to run the growth curve. Default is 20.
percentage	Boolean value. If TRUE, the size is given as a percentage of the maximal size.

Value

An array (species x age) containing the weight in grams.

See Also

Other summary functions: getBiomass(), getDiet(), getN(), getSSB(), getYield(), getYieldGear()

Examples

growth_curves <- getGrowthCurves(NS_params, species = c("Cod", "Haddock"))
str(growth_curves)

library(ggplot2)
ggplot(melt(growth_curves)) +
  geom_line(aes(Age, value)) +
  facet_wrap(~ Species, scales = "free") +
  ylab("Size[g]") + xlab("Age[years]")

drfinlayscott/mizer documentation built on April 13, 2024, 9:16 a.m.