In drighelli/AllenInstituteBrainData: Brain Data from Allen Institute Brain Atlas

Description

This package retrieves data from Allen Brain Institute NEMO repository and shape them in a Bioconductor data structure form for further use, such as data investigation and analysis or as cell annotation reference.

Available Datasets

A list of available datasets and associated DataType:

• Allen_Mouse_2020 : retrieves the Zeng dataset of 31053 features and 1169213 cells for mouse brain data related to year 2020. (ref to be specified)

Retrieving Data

To retrieve data simply use the AllenInstituteBrainData function, it queries the NeMO Allen Institute database for the specified DataType argument. The function returns a SingleCellExperiment data object.

library(AllenInstituteBrainData)
(sce <- AllenInstituteBrainData("Allen_Mouse_2020"))

Session info {.unnumbered}

sessionInfo()

drighelli/AllenInstituteBrainData documentation built on Oct. 26, 2023, 9:01 p.m.