addUserEdges: Add user edgelist to edgelist found in graphite
In drjingma/netgsa: Network-Based Gene Set Analysis
Description
Usage
Arguments
Details
Value
Author(s)
References
See Also
Description
Combine user edges with those identified in graphite. This is a helper function in prepareAdjMat and should not be called by the user.
Usage
1
addUserEdges(non_user_edges, user_edges)
Arguments
non_user_edges
Data.table of user edges found in graphite databases
user_edges
Data.table of user edges
Details
This function reconciles conflicting information between user edges and edges found in graphite. This function gives preference to user information. For example, if the user specifies a frequency for an edge that will be used rather than the frequency calculated from the graphite databases.
Value
A data.table of edges including both user specified and graphite identified edges.
Author(s)
Michael Hellstern
References
Ma, J., Shojaie, A. & Michailidis, G. (2016) Network-based pathway enrichment analysis with incomplete network information. Bioinformatics 32(20):165–3174.
See Also
drjingma/netgsa documentation built on Feb. 22, 2022, 5:18 p.m.
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Description Usage Arguments Details Value Author(s) References See Also
Description
Combine user edges with those identified in graphite. This is a helper function in prepareAdjMat and should not be called by the user.
Usage
1 | addUserEdges(non_user_edges, user_edges)
|
Arguments
non_user_edges |
Data.table of user edges found in graphite databases |
user_edges |
Data.table of user edges |
Details
This function reconciles conflicting information between user edges and edges found in graphite. This function gives preference to user information. For example, if the user specifies a frequency for an edge that will be used rather than the frequency calculated from the graphite databases.
Value
A data.table of edges including both user specified and graphite identified edges.
Author(s)
Michael Hellstern
References
Ma, J., Shojaie, A. & Michailidis, G. (2016) Network-based pathway enrichment analysis with incomplete network information. Bioinformatics 32(20):165–3174.
See Also
R Package Documentation
Browse R Packages
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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