Files in droglenc/FSA

Simple Fisheries Stock Assessment Methods

.Rbuildignore

.github/.gitignore

.github/ISSUE_TEMPLATE/release-prep-template.md

.github/workflows/R-CMD-check.yaml

.github/workflows/pkgdown.yaml

.github/workflows/test-coverage.yaml

.gitignore

CODE_OF_CONDUCT.md

COPYING

DESCRIPTION

FSA.Rproj

LICENSE

NAMESPACE

NEWS.md R/BluegillJL.R R/BrookTroutTH.R R/CIDists.R R/ChinookArg.R R/CodNorwegian.R R/CutthroatAL.R R/Ecoli.R R/FSA-defunct.R R/FSA-internals.R R/FSA.R R/FSAUtils.R R/Mirex.R R/PSDlit.R R/PikeNY.R R/PikeNYPartial1.R R/SMBassLS.R R/SMBassWB.R R/SpotVA1.R R/Summarize.R R/WR79.R R/WSlit.R R/WhitefishLC.R R/addZeroCatch.R R/ageComparisons.R R/alkIndivAge.R R/alkPlot.R R/alkSummaries.R R/bootstrap.R R/capHistConvert.R R/capHistSum.R R/catchCurve.R R/chapmanRobson.R R/depletion.R R/dunnTest.R R/expandCounts.R R/expandLenFreq.R R/extraTests.R R/growthModels.R R/hist.formula.R R/histFromSum.R R/knitUtil.R R/ksTest.R R/lencat.R R/lwCompPreds.R R/metaM.R R/mrClosed.R R/mrOpen.R R/nlsTracePlot.R R/psdAdd.R R/psdCI.R R/psdCalc.R R/psdPlot.R R/psdVal.R R/removal.R R/srStarts.R R/stockRecruitment.R R/sumTable.R R/tictactoe.R R/vbStarts.R R/wrAdd.R R/wsVal.R README.md

_pkgdown.yml

codecov.yml

cran-comments/cran-comments-v0_8_0.md cran-comments/cran-comments-v0_8_0a.md cran-comments/cran-comments-v0_8_1.md cran-comments/cran-comments-v0_8_10.md cran-comments/cran-comments-v0_8_11.md cran-comments/cran-comments-v0_8_12.md cran-comments/cran-comments-v0_8_13.md cran-comments/cran-comments-v0_8_14.md cran-comments/cran-comments-v0_8_15.md cran-comments/cran-comments-v0_8_16.md cran-comments/cran-comments-v0_8_17.md cran-comments/cran-comments-v0_8_19.md cran-comments/cran-comments-v0_8_2.md cran-comments/cran-comments-v0_8_20.md cran-comments/cran-comments-v0_8_21.md cran-comments/cran-comments-v0_8_22.md cran-comments/cran-comments-v0_8_23.md cran-comments/cran-comments-v0_8_24.md cran-comments/cran-comments-v0_8_25.md cran-comments/cran-comments-v0_8_26.md cran-comments/cran-comments-v0_8_27.md cran-comments/cran-comments-v0_8_28.md cran-comments/cran-comments-v0_8_29.md cran-comments/cran-comments-v0_8_3.md cran-comments/cran-comments-v0_8_30.md cran-comments/cran-comments-v0_8_31.md cran-comments/cran-comments-v0_8_32.md cran-comments/cran-comments-v0_8_4.md cran-comments/cran-comments-v0_8_5.md cran-comments/cran-comments-v0_8_6.md cran-comments/cran-comments-v0_8_7.md cran-comments/cran-comments-v0_8_8.md cran-comments/cran-comments-v0_8_9.md cran-comments/cran-comments-v0_9_0.md cran-comments/cran-comments-v0_9_1.md cran-comments/cran-comments-v0_9_2.md cran-comments/cran-comments-v0_9_3.md cran-comments/cran-comments-v0_9_4.md cran-comments/cran-comments-v0_9_5.md

data-raw/BluegillJL.csv

data-raw/BrookTroutTH.csv

data-raw/ChinookArg.csv

data-raw/CodNorwegian.csv

data-raw/CutthroatAL.csv

data-raw/Ecoli.csv

data-raw/Mirex.csv

data-raw/PSDlit.csv

data-raw/PikeNY.csv

data-raw/PikeNYPartial1.csv

data-raw/SMBassLS.csv

data-raw/SMBassWB.csv

data-raw/SpotVA1.csv

data-raw/WR79.csv

data-raw/WSlit.csv

data-raw/WhitefishLC.csv

data-raw/aaaConvertCSV2RDATA.R data-raw/aaaConvertTab2CSV.R data-raw/aaaConvertText2RDA.R

data/BluegillJL.rdata

data/BrookTroutTH.rdata

data/ChinookArg.rdata

data/CodNorwegian.rdata

data/CutthroatAL.rdata

data/Ecoli.rdata

data/Mirex.rdata

data/PSDlit.rdata

data/PikeNY.rdata

data/PikeNYPartial1.rdata

data/SMBassLS.rdata

data/SMBassWB.rdata

data/SpotVA1.rdata

data/WR79.rdata

data/WSlit.rdata

data/WhitefishLC.rdata

docs/LICENSE-text.html

docs/authors.html

docs/docsearch.css

docs/favicon.ico

docs/index.html

docs/jquery.sticky-kit.min.js

docs/link.svg

docs/logo.png

docs/news/index.html

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/BluegillJL.html

docs/reference/BrookTroutTH-1.png

docs/reference/BrookTroutTH.html

docs/reference/ChinookArg-1.png

docs/reference/ChinookArg.html

docs/reference/CodNorwegian-1.png

docs/reference/CodNorwegian.html

docs/reference/CutthroatAL.html

docs/reference/Ecoli.html

docs/reference/FSA-internals.html

docs/reference/FSA.html

docs/reference/FSAUtils.html

docs/reference/Mirex.html

docs/reference/PSDlit.html

docs/reference/PikeNY.html

docs/reference/PikeNYPartial1.html

docs/reference/SMBassLS.html

docs/reference/SMBassWB.html

docs/reference/Schnute-1.png

docs/reference/Schnute-2.png

docs/reference/Schnute-3.png

docs/reference/Schnute-4.png

docs/reference/Schnute-5.png

docs/reference/Schnute.html

docs/reference/SpotVA1-1.png

docs/reference/SpotVA1.html

docs/reference/Subset.html

docs/reference/Summarize.html

docs/reference/WR79.html

docs/reference/WSlit.html

docs/reference/WhitefishLC.html

docs/reference/addZeroCatch.html

docs/reference/ageBias-1.png

docs/reference/ageBias-10.png

docs/reference/ageBias-11.png

docs/reference/ageBias-12.png

docs/reference/ageBias-13.png

docs/reference/ageBias-14.png

docs/reference/ageBias-15.png

docs/reference/ageBias-16.png

docs/reference/ageBias-17.png

docs/reference/ageBias-18.png

docs/reference/ageBias-19.png

docs/reference/ageBias-2.png

docs/reference/ageBias-20.png

docs/reference/ageBias-21.png

docs/reference/ageBias-22.png

docs/reference/ageBias-3.png

docs/reference/ageBias-4.png

docs/reference/ageBias-5.png

docs/reference/ageBias-6.png

docs/reference/ageBias-7.png

docs/reference/ageBias-8.png

docs/reference/ageBias-9.png

docs/reference/ageBias.html

docs/reference/agePrecision-1.png

docs/reference/agePrecision-10.png

docs/reference/agePrecision-2.png

docs/reference/agePrecision-3.png

docs/reference/agePrecision-4.png

docs/reference/agePrecision-5.png

docs/reference/agePrecision-6.png

docs/reference/agePrecision-7.png

docs/reference/agePrecision-8.png

docs/reference/agePrecision-9.png

docs/reference/agePrecision.html

docs/reference/alkAgeDist.html

docs/reference/alkIndivAge.html

docs/reference/alkMeanVar.html

docs/reference/alkPlot-1.png

docs/reference/alkPlot-10.png

docs/reference/alkPlot-11.png

docs/reference/alkPlot-12.png

docs/reference/alkPlot-13.png

docs/reference/alkPlot-14.png

docs/reference/alkPlot-15.png

docs/reference/alkPlot-16.png

docs/reference/alkPlot-2.png

docs/reference/alkPlot-3.png

docs/reference/alkPlot-4.png

docs/reference/alkPlot-5.png

docs/reference/alkPlot-6.png

docs/reference/alkPlot-7.png

docs/reference/alkPlot-8.png

docs/reference/alkPlot-9.png

docs/reference/alkPlot.html

docs/reference/binCI.html

docs/reference/bootCase.html

docs/reference/capHistConvert.html

docs/reference/capHistSum-1.png

docs/reference/capHistSum-2.png

docs/reference/capHistSum-3.png

docs/reference/capHistSum.html

docs/reference/catchCurve-1.png

docs/reference/catchCurve-2.png

docs/reference/catchCurve-3.png

docs/reference/catchCurve-4.png

docs/reference/catchCurve-5.png

docs/reference/catchCurve.html

docs/reference/chapmanRobson-1.png

docs/reference/chapmanRobson-2.png

docs/reference/chapmanRobson-3.png

docs/reference/chapmanRobson-4.png

docs/reference/chapmanRobson-5.png

docs/reference/chapmanRobson-6.png

docs/reference/chapmanRobson.html

docs/reference/chooseColors-1.png

docs/reference/chooseColors-2.png

docs/reference/chooseColors-3.png

docs/reference/chooseColors-4.png

docs/reference/chooseColors-5.png

docs/reference/chooseColors-6.png

docs/reference/chooseColors.html

docs/reference/col2rgbt.html

docs/reference/compIntercepts-1.png

docs/reference/compIntercepts.html

docs/reference/compSlopes-1.png

docs/reference/compSlopes.html

docs/reference/depletion-1.png

docs/reference/depletion-2.png

docs/reference/depletion-3.png

docs/reference/depletion-4.png

docs/reference/depletion.html

docs/reference/diags.html

docs/reference/dunnTest.html

docs/reference/expandCounts.html

docs/reference/expandLenFreq.html

docs/reference/extraTests.html

docs/reference/fact2num.html

docs/reference/figures/logo.png

docs/reference/fishR.html

docs/reference/fitPlot-1.png

docs/reference/fitPlot-10.png

docs/reference/fitPlot-11.png

docs/reference/fitPlot-12.png

docs/reference/fitPlot-13.png

docs/reference/fitPlot-14.png

docs/reference/fitPlot-15.png

docs/reference/fitPlot-16.png

docs/reference/fitPlot-17.png

docs/reference/fitPlot-18.png

docs/reference/fitPlot-19.png

docs/reference/fitPlot-2.png

docs/reference/fitPlot-20.png

docs/reference/fitPlot-21.png

docs/reference/fitPlot-22.png

docs/reference/fitPlot-23.png

docs/reference/fitPlot-24.png

docs/reference/fitPlot-25.png

docs/reference/fitPlot-26.png

docs/reference/fitPlot-27.png

docs/reference/fitPlot-3.png

docs/reference/fitPlot-4.png

docs/reference/fitPlot-5.png

docs/reference/fitPlot-6.png

docs/reference/fitPlot-7.png

docs/reference/fitPlot-8.png

docs/reference/fitPlot-9.png

docs/reference/fitPlot.html

docs/reference/fsaNews.html

docs/reference/geomean.html

docs/reference/growthModels-1.png

docs/reference/growthModels-10.png

docs/reference/growthModels-11.png

docs/reference/growthModels-12.png

docs/reference/growthModels-13.png

docs/reference/growthModels-14.png

docs/reference/growthModels-15.png

docs/reference/growthModels-16.png

docs/reference/growthModels-17.png

docs/reference/growthModels-18.png

docs/reference/growthModels-19.png

docs/reference/growthModels-2.png

docs/reference/growthModels-20.png

docs/reference/growthModels-3.png

docs/reference/growthModels-4.png

docs/reference/growthModels-5.png

docs/reference/growthModels-6.png

docs/reference/growthModels-7.png

docs/reference/growthModels-8.png

docs/reference/growthModels-9.png

docs/reference/growthModels.html

docs/reference/headtail.html

docs/reference/hist.formula-1.png

docs/reference/hist.formula-10.png

docs/reference/hist.formula-11.png

docs/reference/hist.formula-12.png

docs/reference/hist.formula-13.png

docs/reference/hist.formula-14.png

docs/reference/hist.formula-15.png

docs/reference/hist.formula-16.png

docs/reference/hist.formula-2.png

docs/reference/hist.formula-3.png

docs/reference/hist.formula-4.png

docs/reference/hist.formula-5.png

docs/reference/hist.formula-6.png

docs/reference/hist.formula-7.png

docs/reference/hist.formula-8.png

docs/reference/hist.formula-9.png

docs/reference/hist.formula.html

docs/reference/histFromSum-1.png

docs/reference/histFromSum-2.png

docs/reference/histFromSum-3.png

docs/reference/histFromSum-4.png

docs/reference/histFromSum-5.png

docs/reference/histFromSum-6.png

docs/reference/histFromSum.html

docs/reference/hoCoef.html

docs/reference/hyperCI.html

docs/reference/index.html

docs/reference/knitUtil.html

docs/reference/ksTest.html

docs/reference/lagratio.html

docs/reference/lencat.html

docs/reference/logbtcf.html

docs/reference/lwCompPreds-1.png

docs/reference/lwCompPreds-10.png

docs/reference/lwCompPreds-2.png

docs/reference/lwCompPreds-3.png

docs/reference/lwCompPreds-4.png

docs/reference/lwCompPreds-5.png

docs/reference/lwCompPreds-6.png

docs/reference/lwCompPreds-7.png

docs/reference/lwCompPreds-8.png

docs/reference/lwCompPreds-9.png

docs/reference/lwCompPreds.html

docs/reference/mapvalues.html

docs/reference/metaM.html

docs/reference/mrClosed-1.png

docs/reference/mrClosed-2.png

docs/reference/mrClosed.html

docs/reference/mrOpen.html

docs/reference/nlsBoot.html

docs/reference/nlsTracePlot-1.png

docs/reference/nlsTracePlot-2.png

docs/reference/nlsTracePlot.html

docs/reference/oddeven.html

docs/reference/perc.html

docs/reference/plotAB-1.png

docs/reference/plotAB-2.png

docs/reference/plotAB-3.png

docs/reference/plotAB-4.png

docs/reference/plotAB.html

docs/reference/plotBinResp-1.png

docs/reference/plotBinResp-10.png

docs/reference/plotBinResp-2.png

docs/reference/plotBinResp-3.png

docs/reference/plotBinResp-4.png

docs/reference/plotBinResp-5.png

docs/reference/plotBinResp-6.png

docs/reference/plotBinResp-7.png

docs/reference/plotBinResp-8.png

docs/reference/plotBinResp-9.png

docs/reference/plotBinResp.html

docs/reference/poiCI.html

docs/reference/psdAdd.html

docs/reference/psdCI.html

docs/reference/psdCalc.html

docs/reference/psdPlot-1.png

docs/reference/psdPlot-2.png

docs/reference/psdPlot-3.png

docs/reference/psdPlot-4.png

docs/reference/psdPlot-5.png

docs/reference/psdPlot-6.png

docs/reference/psdPlot-7.png

docs/reference/psdPlot-8.png

docs/reference/psdPlot-9.png

docs/reference/psdPlot.html

docs/reference/psdVal.html

docs/reference/rSquared.html

docs/reference/rcumsum.html

docs/reference/removal.html

docs/reference/residPlot-1.png

docs/reference/residPlot-10.png

docs/reference/residPlot-11.png

docs/reference/residPlot-12.png

docs/reference/residPlot-13.png

docs/reference/residPlot-14.png

docs/reference/residPlot-15.png

docs/reference/residPlot-16.png

docs/reference/residPlot-17.png

docs/reference/residPlot-18.png

docs/reference/residPlot-19.png

docs/reference/residPlot-2.png

docs/reference/residPlot-20.png

docs/reference/residPlot-21.png

docs/reference/residPlot-22.png

docs/reference/residPlot-23.png

docs/reference/residPlot-24.png

docs/reference/residPlot-25.png

docs/reference/residPlot-26.png

docs/reference/residPlot-27.png

docs/reference/residPlot-28.png

docs/reference/residPlot-29.png

docs/reference/residPlot-3.png

docs/reference/residPlot-4.png

docs/reference/residPlot-5.png

docs/reference/residPlot-6.png

docs/reference/residPlot-7.png

docs/reference/residPlot-8.png

docs/reference/residPlot-9.png

docs/reference/residPlot.html

docs/reference/se.html

docs/reference/srStarts-1.png

docs/reference/srStarts-2.png

docs/reference/srStarts-3.png

docs/reference/srStarts-4.png

docs/reference/srStarts-5.png

docs/reference/srStarts.html

docs/reference/stockRecruitment-1.png

docs/reference/stockRecruitment-2.png

docs/reference/stockRecruitment-3.png

docs/reference/stockRecruitment-4.png

docs/reference/stockRecruitment-5.png

docs/reference/stockRecruitment.html

docs/reference/sumTable.html

docs/reference/tictactoe-1.png

docs/reference/tictactoe-2.png

docs/reference/tictactoe.html

docs/reference/validn.html

docs/reference/vbStarts-1.png

docs/reference/vbStarts-10.png

docs/reference/vbStarts-11.png

docs/reference/vbStarts-12.png

docs/reference/vbStarts-13.png

docs/reference/vbStarts-14.png

docs/reference/vbStarts-15.png

docs/reference/vbStarts-2.png

docs/reference/vbStarts-3.png

docs/reference/vbStarts-4.png

docs/reference/vbStarts-5.png

docs/reference/vbStarts-6.png

docs/reference/vbStarts-7.png

docs/reference/vbStarts-8.png

docs/reference/vbStarts-9.png

docs/reference/vbStarts.html

docs/reference/wrAdd.html

docs/reference/wsVal.html

docs/sitemap.xml

inst/CITATION

inst/extdata/Boot1.RData

inst/extdata/PSDWR_testdata.csv

inst/extdata/nlsBoot1.RData

inst/sticker/sticker.R man/BluegillJL.Rd man/BrookTroutTH.Rd man/ChinookArg.Rd man/CodNorwegian.Rd man/CutthroatAL.Rd man/Ecoli.Rd man/FSA-defunct.Rd man/FSA-internals.Rd man/FSA.Rd man/Mirex.Rd man/PSDlit.Rd man/PikeNY.Rd man/PikeNYPartial1.Rd man/SMBassLS.Rd man/SMBassWB.Rd man/Schnute.Rd man/SchnuteRichards.Rd man/SpotVA1.Rd man/Summarize.Rd man/WR79.Rd man/WSlit.Rd man/WhitefishLC.Rd man/addZeroCatch.Rd man/ageBias.Rd man/agePrecision.Rd man/alkAgeDist.Rd man/alkIndivAge.Rd man/alkMeanVar.Rd man/alkPlot.Rd man/binCI.Rd man/boot.Rd man/capFirst.Rd man/capHistConvert.Rd man/capHistSum.Rd man/catchCurve.Rd man/chapmanRobson.Rd man/col2rgbt.Rd man/depletion.Rd man/dunnTest.Rd man/expandCounts.Rd man/expandLenFreq.Rd man/extraTests.Rd man/fact2num.Rd

man/figures/logo.png

man/fishR.Rd man/geomean.Rd man/growthModels.Rd man/headtail.Rd man/hist.formula.Rd man/histFromSum.Rd man/hyperCI.Rd man/is.odd.Rd man/knitUtil.Rd man/ksTest.Rd man/lagratio.Rd man/lencat.Rd man/logbtcf.Rd man/lwCompPreds.Rd man/metaM.Rd man/mrClosed.Rd man/mrOpen.Rd man/nlsBoot.Rd man/nlsTracePlot.Rd man/peek.Rd man/perc.Rd man/plotAB.Rd man/poiCI.Rd man/psdAdd.Rd man/psdCI.Rd man/psdCalc.Rd man/psdPlot.Rd man/psdVal.Rd man/rSquared.Rd man/rcumsum.Rd man/removal.Rd man/repeatedRows2Keep.Rd man/se.Rd man/srFuns.Rd man/srStarts.Rd man/sumTable.Rd man/tictactoe.Rd man/validn.Rd man/vbStarts.Rd man/wrAdd.Rd man/wsVal.Rd

pkgdown/favicon/apple-touch-icon-120x120.png

pkgdown/favicon/apple-touch-icon-152x152.png

pkgdown/favicon/apple-touch-icon-180x180.png

pkgdown/favicon/apple-touch-icon-60x60.png

pkgdown/favicon/apple-touch-icon-76x76.png

pkgdown/favicon/apple-touch-icon.png

pkgdown/favicon/favicon-16x16.png

pkgdown/favicon/favicon-32x32.png

pkgdown/favicon/favicon.ico

tests/plottests/alkPlot.R tests/plottests/histPlot.R tests/plottests/lwCompPredsPlot.R tests/plottests/psdPlot.R tests/test-all.R

tests/testthat/.gitignore

tests/testthat/testthat_AgeComparisons.R tests/testthat/testthat_AgeLengthKey.R tests/testthat/testthat_FSAUtils.R tests/testthat/testthat_Internals.R tests/testthat/testthat_LWCompPreds.R tests/testthat/testthat_PSD.R tests/testthat/testthat_StockRecruit.R tests/testthat/testthat_Summarize.R tests/testthat/testthat_VonBertalanffy.R tests/testthat/testthat_WSWR.R tests/testthat/testthat_addZeroCatch.R tests/testthat/testthat_bootstrap.R tests/testthat/testthat_capHist.R tests/testthat/testthat_catchCurve.R tests/testthat/testthat_ciDists.R tests/testthat/testthat_depletion.R tests/testthat/testthat_dunnTest.R tests/testthat/testthat_expandCounts.R tests/testthat/testthat_expandLenFreq.R tests/testthat/testthat_extraTests.R tests/testthat/testthat_growthFuns.R tests/testthat/testthat_histFormula.R tests/testthat/testthat_knitUtil.R tests/testthat/testthat_ksTest.R tests/testthat/testthat_lencat.R tests/testthat/testthat_metaM.R tests/testthat/testthat_mrClosed.R tests/testthat/testthat_mrOpen.R tests/testthat/testthat_nlsTracePlot.R tests/testthat/testthat_removal.R tests/testthat/testthat_sumTable.R

droglenc/FSA documentation built on Aug. 30, 2023, 12:51 a.m.