Man pages for drostlab/edgynode
Comparison of Gene Regulatory Networks
| assert_adjacency | Check whether a matrix fulfills the 'edgynode' adjacency... |
| convert_adj_to_edges | Convert an adjacency matrix to an edge list |
| convert_adj_to_igraph | Convert an adjacency matrix to igraph object |
| convert_adj_to_matrix | Convert an adjacency matrix to plain matrix |
| convert_edges_to_adj | Convert an edge list to an adjacency matrix |
| import_genie3 | Output Parser for GENIE3 |
| is_adjacency | Check whether a matrix fulfills the 'edgynode' adjacency... |
| is_binary | Check if a numeric matrix generated with 'make_adjacency' and... |
| is_standard | Check if a numeric matrix generated with 'make_adjacency'... |
| is_symmetric | Check if a 'make_adjacency' converted matrix is symmetric |
| make_adjacency | Convert a raw input matrix into an 'edgynode' adjacency... |
| make_binary | Convert a numeric matrix generated with 'make_adjacency' into... |
| make_standard | Force a numeric matrix generated with 'make_adjacency' into... |
| make_symmetric | Force a matrix into being symmetric |
| metric_dist_delta_con | Calculate graph distance based on DeltaCon |
| network_benchmark_noise_filtering | Benchmarking of noise filtering and normalization impact on... |
| network_benchmark_noise_filtering_test | Perform a statistical test on noise filter benchmarking... |
| network_dist_pairwise_genes | Comparison of binary adjacency weights of the same gene in... |
| network_filter_edges | Matrix filter edges |
| network_make_binary | Matrix convert to binary |
| network_rescale | Rescaling function customized for adjacency matrices |
| plot_filtering_network_weight_distribution | Plot the weight distribution for all edges of a gene |
| ppcor | Output Parser for PPCOR |
| summary_centrality_alpha | Find Bonacich alpha centrality scores of network positions |
| summary_centrality_harmonic | Harmonic centrality of vertices |
| summary_centrality_kleinberg | Kleinberg's hub and authority centrality scores. |
| summary_centrality_subgraph | Find subgraph centrality scores of network positions |
| summary_delta_con_similarity | Calculate DeltaCon similarity |
