make_standard: Force a numeric matrix generated with 'make_adjacency' into...

In drostlab/edgynode: Comparison of Gene Regulatory Networks

Force a numeric matrix generated with make_adjacency into the edgynode standard matrix format

Description

This function takes an adjacency matrix as input and converts it into a standard form (based on the options provided).

Usage

make_standard(
  adj,
  max_value = 1,
  split_by_margin = NULL,
  no_negative = TRUE,
  no_self_loops = TRUE
)

Arguments

adj	an adjacency matrix converted from a raw input matrix via make_adjacency.
max_value	the maximum (positive) value that should exist in the matrix; default is 1; setting this to NULL or max(abs(adj)) leaves the values unchanged
no_negative	whether there should be negative values or just their absolute value (e.g. in the case of correlations); default is no_negative = TRUE.
no_self_loops	whether the values in the main diagonal of the adjacency matrix should be 0; default is no_negative = TRUE.

Author(s)

Ilias Moutsopoulos

See Also

make_adjacency, make_symmetric, make_binary

drostlab/edgynode documentation built on March 29, 2024, 10:36 a.m.