Description Usage Arguments Author(s) See Also
View source: R/select_best_splice_Variants.R
This function selects orthologs based on either gene locus or splice variant.
1 2 3 4 5 6 7 | select_best_splice_variants(
dnds_tbl,
annotation_file_query,
annotation_file_subject,
collapse_by = "gene_locus",
format = c("gtf", "gtf")
)
|
dnds_tbl |
a tibble returned by |
annotation_file_query |
file path to query annotation file in either |
annotation_file_subject |
file path to query annotation file in either |
collapse_by |
locus type by which orthologs should be determined. Options are:
|
format |
a vector of length 2 storing the annotation file formats of the query annotation file and subject annotation file: either |
Hajk-Georg Drost
dnds
, internal_import_dnds_across_multiple_species
, import_dnds_across_multiple_species
,
dnds_across_multiple_species
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