Man pages for drvalle1/EcoCluster
Bayesian Clustering using Truncated Stick-Breaking priors
| convertSBtoNormal | Convert the vector v into the vector theta/phi using the... |
| get.logl | Calculate the log-likelihood |
| getql | Summarize data for SBM according to the different location... |
| gibbs.SAM | Main function of the Species Archetype Model (SAM) |
| mixture.gibbs | Runs the Gibbs sampler and returns samples from the posterior... |
| ncs | This function calculates ncs1 and ncs0 |
| sample.alpha | Sample alpha |
| sample.betas | Sample betas |
| sample.cs | Sample cs |
| sample.gamma | Sample the TSB prior parameter |
| sample.gamma.sam | Sample gamma |
| sample.gamma.u | Sample gamma.u |
| sample.gamma.v | Sample gamma.v |
| sample.omega | Sample omega |
| sample.phi | Sample phi and uk parameters |
| sample.psi | Sample psi parameters |
| sample.theta | Sample theta and vk parameters |
| sample.theta.sam | Sample theta |
| sample.w | Sample w |
| sample.z | Sample z |
| SBM | Main function of the Stochastic Block Model (SBM) |
| tnorm | Sample from a truncated normal distribution |
| update.theta | Samples theta and v parameters |
| update.z | Samples z |
