sample.w: Sample w

In drvalle1/EcoCluster: Bayesian Clustering using Truncated Stick-Breaking priors

Description

Sample the vector w containing the membership of each species

Usage

sample.w(
  lphi,
  dat,
  dat1m,
  lpsi,
  l1mpsi,
  ngroup.spp,
  ngroup.loc,
  nloc,
  nspp,
  w,
  z
)

Arguments

lphi	equal to log(phi)
dat	L x S matrix, containing the presence-absence data
dat1m	L x S matrix, calculated as 1-dat
lpsi	equal to log(psi)
l1mpsi	equal to log(1-psi)
ngroup.spp	thismaximum number of species groups (KS)
ngroup.loc	maximum number of location groups (KL)
nloc	total number of locations (L)
nspp	total number of species (S)
w	vector of length S, storing the current membership of each species
z	vector of length L, storing the current membership of each locations

Value

this function returns a vector of length S containing w

drvalle1/EcoCluster documentation built on Jan. 25, 2022, 12:46 a.m.