hcl.heatmap.plot: Transformation matrix plot
In dschlauch/MONSTER: Modeling Network State Transitions from Expression and Regulatory data (MONSTER)
Description
Usage
Arguments
Value
Examples
Description
This function plots a hierachically clustered heatmap and
corresponding dendrogram of a transaction matrix
Usage
1
hcl.heatmap.plot(x, method = "pearson")
Arguments
x
monster Object
method
distance metric for hierarchical clustering.
Default is "Pearson correlation"
Value
ggplot2 object for transition matrix heatmap
Examples
1
2
3
4
data(yeast)
cc.net <- monsterNI(yeast$motif,yeast$exp.cc)
sr.net <- monsterNI(yeast$motif,yeast$exp.sr)
transformation.matrix(cc.net, sr.net)
dschlauch/MONSTER documentation built on May 15, 2019, 2:57 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
This function plots a hierachically clustered heatmap and corresponding dendrogram of a transaction matrix
Usage
1 | hcl.heatmap.plot(x, method = "pearson")
|
Arguments
x |
monster Object |
method |
distance metric for hierarchical clustering. Default is "Pearson correlation" |
Value
ggplot2 object for transition matrix heatmap
Examples
1 2 3 4 | data(yeast)
cc.net <- monsterNI(yeast$motif,yeast$exp.cc)
sr.net <- monsterNI(yeast$motif,yeast$exp.sr)
transformation.matrix(cc.net, sr.net)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.