transitionNetworkPlot: This function uses igraph to plot the transition matrix as a...

In dschlauch/MONSTER: Modeling Network State Transitions from Expression and Regulatory data (MONSTER)

Description

This function uses igraph to plot the transition matrix as a network

Usage

transitionNetworkPlot(monsterObj, numEdges = 100, numTopTFs = 10)

Arguments

monsterObj	Monster Object
numEdges	The number of edges to display
numTopTFs	The number of TFs to display, ranked by largest dTFI

Value

igraph object for transition matrix

Examples

data(yeast)
monsterRes <- monster(yeast$exp.ko,
    c(rep(1,42),rep(0,49),rep(NA,15)),
    yeast$motif, nullPerms=10, numMaxCores=4)
transitionNetworkPlot(monsterRes)

dschlauch/MONSTER documentation built on May 15, 2019, 2:57 p.m.