Description Usage Arguments Value Examples
Calculate the similarity matrix
1 2 3 | calculateSMatrix(gt, sampleNames = sampleNames, phased = T,
minVariants = 5, scaleBySampleAF = F, outputDir = ".", saveDir = NA,
saveFile = NA, simFun = NULL, verbose = F)
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genotypes |
data object containing the phased or unphased genotypes by samples |
cex |
character expansion for the text |
mar |
margin paramaters; vector of length 4 (see |
Object containing similarity matrix and other results
1 2 | data(toyGenotypes)
calculateSMatrix(toyGenotypes)
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