Description Usage Arguments Value Examples
Get the population structure p-values from a stego object. This is a test of the null hypotheses that the data is derived a homogeneous population.
1 |
stego |
a stego result object |
p-value for test or a list a p-values from each group
1 2 3 4 5 6 7 8 9 10 | data(toyGenotypes)
run_stegotoyGenotypes)
labels <- c(rep("Group A",100), rep("Group B",100))
run_stegotoyGenotypes, groups="each.separately", labels=labels)
labels <- paste("Group",c(LETTERS[rep(1:4,25)],LETTERS[rep(5:8,25)]))
super <- c(rep("Super A",100), rep("Super B",100))
res <- run_stegotoyGenotypes, groups="pairwise.within.superpop", labels=labels, super=super)
structurePValues(res)
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