hcl.heatmap.plot: Transformation matrix plot

Description Usage Arguments Examples

View source: R/analysis_functions.R

Description

This function plots a hierachically clustered heatmap and corresponding dendrogram of a transaction matrix

Usage

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hcl.heatmap.plot(x, method = "pearson")

Arguments

method

distance metric for hierarchical clustering. Default is "Pearson correlation"

net1

starting network, a genes by transcription factors data.frame with scores for confidence in the existence of edges between

Examples

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data(yeast.panda)
t.matrix <- transformation.matrix(yeast.panda$cell.cycle, yeast.panda$stress.response)
hcl.heatmap.plot(t.matrix, method="pearson")

dschlauch/bptools documentation built on May 13, 2017, 7:44 a.m.