Description Usage Arguments Examples
This function analyzes a bi-partite network, such as a Transcription factor to gene network derived from the PANDA algorithm.
1 2 | transformation.matrix(network.1, network.2, by.genes = F, standardize = T,
remove.diagonal = T)
|
net1 |
starting network, a genes by transcription factors data.frame with scores for confidence in the existence of edges between |
net2 |
final network, a genes by transcription factors data.frame with scores for confidence in the existence of edges between |
1 2 3 | data(yeast.panda)
t.matrix <- transformation.matrix(yeast.panda$cell.cycle, yeast.panda$stress.response)
hcl.heatmap.plot(t.matrix, method="pearson")
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