transformation.matrix: Bi-partite network analysis tools

Description Usage Arguments Examples

View source: R/analysis_functions.R

Description

This function analyzes a bi-partite network, such as a Transcription factor to gene network derived from the PANDA algorithm.

Usage

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transformation.matrix(network.1, network.2, by.genes = F, standardize = T,
  remove.diagonal = T)

Arguments

net1

starting network, a genes by transcription factors data.frame with scores for confidence in the existence of edges between

net2

final network, a genes by transcription factors data.frame with scores for confidence in the existence of edges between

Examples

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data(yeast.panda)
t.matrix <- transformation.matrix(yeast.panda$cell.cycle, yeast.panda$stress.response)
hcl.heatmap.plot(t.matrix, method="pearson")

dschlauch/bptools documentation built on May 13, 2017, 7:44 a.m.