transformation.matrix: Bi-partite network analysis tools

In dschlauch/bptools: Bi-partite network analysis tools

Description

This function analyzes a bi-partite network, such as a Transcription factor to gene network derived from the PANDA algorithm.

Usage

transformation.matrix(network.1, network.2, by.genes = F, standardize = T,
  remove.diagonal = T)

Arguments

net1	starting network, a genes by transcription factors data.frame with scores for confidence in the existence of edges between
net2	final network, a genes by transcription factors data.frame with scores for confidence in the existence of edges between

Examples

data(yeast.panda)
t.matrix <- transformation.matrix(yeast.panda$cell.cycle, yeast.panda$stress.response)
hcl.heatmap.plot(t.matrix, method="pearson")

dschlauch/bptools documentation built on May 15, 2019, 2:58 p.m.