calculateSMatrix: Calculate the similarity matrix

In dschlauch/stego: Similarity Test for Estimation of Genetic Outliers

Description

Calculate the similarity matrix

Usage

calculateSMatrix(gt, sampleNames = sampleNames, phased = T,
  minVariants = 5, scaleBySampleAF = F, outputDir = ".", saveDir = NA,
  saveFile = NA, simFun = NULL, verbose = F)

Arguments

genotypes	data object containing the phased or unphased genotypes by samples
cex	character expansion for the text
mar	margin paramaters; vector of length 4 (see par)

Value

Object containing similarity matrix and other results

Examples

data(toyGenotypes)
calculateSMatrix(toyGenotypes)

dschlauch/stego documentation built on May 15, 2019, 2:58 p.m.