plotStegoHeatmap: Plot the distribution of similarity statistics

Description Usage Arguments Value Examples

Description

Plot the distribution of similarity statistics

Usage

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plotStegoHeatmap(resObj, plotname = "", ...)

Arguments

plotname

title of the plot

genotypes

data object containing the phased or unphased genotypes by samples

Value

Object containing similarity matrix and other results

Examples

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data(toyGenotypes)

run_stegotoyGenotypes)
labels <- c(rep("Group A",100), rep("Group B",100))
run_stegotoyGenotypes, groups="each.separately", labels=labels)

labels <- paste("Group",c(LETTERS[rep(1:4,25)],LETTERS[rep(5:8,25)]))
super <- c(rep("Super A",100), rep("Super B",100))
res <- run_stegotoyGenotypes, groups="pairwise.within.superpop", labels=labels, super=super)

dschlauch/stego documentation built on May 15, 2019, 2:58 p.m.