Description Usage Arguments Details Value
View source: R/fit_agTrend_ssl.R
Fit separate discrete-normal distribution models to an Steller sea lion counts at a single site
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.x |
Data frame for an individual site. Must have been passed through prep_for_fit first! |
model |
Model for interpolation: 'const', 'lin', or 'gp' (see Details) |
obl.corr |
Logical. Should correction be made for oblique photos. |
map.override |
List. method for overriding parameter parameters set to fixed values. This should rarely need to be used |
silent |
Logical. Run without messages |
debug |
Logical. Step into fitting function for interactive evaluation |
penalty |
Wiggliness penalty for 'gp' model |
There are 3 models which can be used for within site interpolation:
const
This interpolates using a simple mean and variance for the site
lin
A linear fit with time is used for interpolation
gp
i.e., Gaussian Process. This model used a time trend plus a random walk of order 2 (RW(2)) to interpolate
counts. Further, the RW(2) process can be further restrained to minimize 'wiggliness' of the curve when necessary. This
prevents overfitting of the curve.
A list with the following elements:
summary Parameter and abundance estimate information?
raw_data Original data plus oblique photo correction estimates
q_output quality control diagnostic data
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