Man pages for dswatson/bioplotr
Pretty, simple, optionally interactive plots for bioinformatics analysis pipelines
| colorize | Assign Colors |
| dist_mat | Create Distance Matrix |
| embed | Embed Manifold |
| format_binom | Format Binomial Things |
| format_features | Format Features |
| gg_out | Output Image |
| is.color | Test for Valid Color Representation |
| kpca_fn | Compute kernel principal components |
| matrixize | Standardize Matrix |
| plot_box | Box Plots by Sample |
| plot_calibration | Probability Calibration Curve(s) |
| plot_concordance | Concordance Plot |
| plot_consensus | Consensus Matrix Heatmap |
| plot_corr | Correlation Plot |
| plot_density | Density Plots by Sample |
| plot_dispersion | Plot Dispersion Estimates |
| plot_drivers | Plot Drivers of Omic Variation |
| plot_heatmap | Omic Heatmap |
| plot_ica | ICA Plot |
| plot_kpca | Kernel PCA Plot |
| plot_lle | LLE Plot |
| plot_lorenz | Lorenz Curve(s) |
| plot_md | Mean-Difference Plot |
| plot_mds | MDS Plot |
| plot_mv | Mean-Variance Plot |
| plot_pca | PCA Plot |
| plot_pr | Precision-Recall Curve(s) |
| plot_qq | QQ Plot |
| plot_quantiles | Plot Quantiles |
| plot_roc | Reicever Operating Characteristic Curve(s) |
| plot_sammon | Sammon Map |
| plot_similarity | Similarity Matrix Heatmap |
| plot_som | SOM |
| plot_survival | Survival Curve(s) |
| plot_taco | Taco Plot |
| plot_tree | Tree Plots |
| plot_tsne | t-SNE Plot |
| plot_umap | UMAP Plot |
| plot_volcano | Volcano Plot |
| plot_voom | Voom Plot |
| pt_alpha | Set Data Point Transparency |
| pt_size | Size Data Points |
| stringify | Format String |
| track_cols | Format Annotation Track Colors |
| var_filt | Filter by Variance |
