plot_tree: Tree Plots

In dswatson/bioplotr: Pretty, simple, optionally interactive plots for bioinformatics analysis pipelines

Tree Plots

Description

This function plots tree structures such as dendrograms and regression trees.

Usage

plot_tree(dat, labels = TRUE, leaf_labels = TRUE, rotate = FALSE, title = NULL)

Arguments

dat	An object representing a dendrogram (e.g. of class hclust), regression tree (e.g. of class rpart), or other tree-like structure.
labels	Plot labels? This refers to items for dendrograms, and break points for regression or classification trees.
leaf_labels	Plot leaf labels? Only relevant for regression and classification trees.
rotate	Rotate plot 90 degrees?
title	Optional plot title.

Details

This function is essentially a wrapper for tools in the ggdendro package, with a few amendments and extra options. See the package documentation for more info.

Examples

hc <- hclust(dist(USArrests))
plot_tree(hc)

dswatson/bioplotr documentation built on March 3, 2023, 9:43 p.m.