colorize | Assign Colors |
dist_mat | Create Distance Matrix |
embed | Embed Manifold |
format_binom | Format Binomial Things |
format_features | Format Features |
gg_out | Output Image |
is.color | Test for Valid Color Representation |
kpca_fn | Compute kernel principal components |
matrixize | Standardize Matrix |
plot_box | Box Plots by Sample |
plot_calibration | Probability Calibration Curve(s) |
plot_concordance | Concordance Plot |
plot_consensus | Consensus Matrix Heatmap |
plot_corr | Correlation Plot |
plot_density | Density Plots by Sample |
plot_dispersion | Plot Dispersion Estimates |
plot_drivers | Plot Drivers of Omic Variation |
plot_heatmap | Omic Heatmap |
plot_ica | ICA Plot |
plot_kpca | Kernel PCA Plot |
plot_lle | LLE Plot |
plot_lorenz | Lorenz Curve(s) |
plot_md | Mean-Difference Plot |
plot_mds | MDS Plot |
plot_mv | Mean-Variance Plot |
plot_pca | PCA Plot |
plot_pr | Precision-Recall Curve(s) |
plot_qq | QQ Plot |
plot_quantiles | Plot Quantiles |
plot_roc | Reicever Operating Characteristic Curve(s) |
plot_sammon | Sammon Map |
plot_similarity | Similarity Matrix Heatmap |
plot_som | SOM |
plot_survival | Survival Curve(s) |
plot_taco | Taco Plot |
plot_tree | Tree Plots |
plot_tsne | t-SNE Plot |
plot_umap | UMAP Plot |
plot_volcano | Volcano Plot |
plot_voom | Voom Plot |
pt_alpha | Set Data Point Transparency |
pt_size | Size Data Points |
stringify | Format String |
track_cols | Format Annotation Track Colors |
var_filt | Filter by Variance |
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