get_community_matrix: Get community matrix from the TripleD database
In dswdejonge/TripleD: Construct a TripleD database.

This functions lets you extract a community matrix (i.e. stations in rows, taxa in columns) from the TripleD databas.

get_community_matrix(
  database,
  taxonomic_level,
  abundance_measure,
  include_incomplete = TRUE
)

`database`	A dataframe, database output from the TripleD package.
`taxonomic_level`	The taxonomic level for which you want to create a community matrix. Options: all species (default) genus family order class phylum
`abundance_measure`	The value in the cells. Options: presence_absence only 1 (present) or 0 (absence) Density_nr_per_m2 individual count per square meter Biomass_g_per_m2" ash-free dry weight in grams per square meter Density_nr_per_m3 individual count per cubic meter Biomass_g_per_m3 ash-free dry weight in grams per cubic meter
`include_incomplete`	Include values based on incomplete data i.e. underestimations? (Default TRUE)

Missing data filled with 0.

Returns a dataframe with StationID as first row.

1 2	get_community_matrix(database, "species", "Biomass_g_per_m2") get_community_matrix(database, "phylum", "Density_nr_per_m2", include_incomplete = FALSE)