API for dtm2451/DittoSeq
User Friendly Single-Cell and Bulk RNA Sequencing Visualization

Global functions
.add_demux_metas_to_Seurat Source code
.add_labels Source code
.add_letters Source code
.add_trajectory_curves Source code
.add_trajectory_lineages Source code
.all_cells Source code
.check_barcode_dups Source code
.check_meta_overwrite Source code
.default_reduction Source code
.dittoPlotVarsAcrossGroups_data_gather Source code
.dittoPlot_add_data_x_direction Source code
.dittoPlot_add_data_y_direction Source code
.dittoPlot_data_gather Source code
.extract_Reduced_Dim Source code
.extract_and_parse_demux_calls Source code
.grab_legend Source code
.leave_default_or_null Source code
.location_.best_to_data.frame Source code
.make_heatmap_annotation_colors Source code
.make_hover_strings_from_df Source code
.make_hover_strings_from_vars Source code
.make_vary_cell_plots Source code
.parse_and_add_lanes Source code
.pick_colors_for_df Source code
.print_demux_import_summary Source code
.remove_legend Source code
.rename_and_or_reorder Source code
.var_OR_get_meta_or_gene Source code
.which_cells Source code
.which_data Source code
Class Man page
Darken Man page Source code
Lighten Man page Source code
RNAseq-class Man page
RNAseq_mock Man page
Simulate Man page Source code
`addMeta<-` Source code
addDimReduction Man page Source code
addMeta<- Man page
addMeta<-.RNAseq Man page
addMetaRNAseq Man page Source code
addPrcomp Man page Source code
demux.SNP.summary Man page Source code
demux.calls.summary Man page Source code
demuxlet.example Man page
dittoBarPlot Man page Source code
dittoBoxPlot Man page Source code
dittoColors Man page Source code
dittoDimPlot Man page Source code
dittoHeatmap Man page Source code
dittoPlot Man page Source code
dittoPlotVarsAcrossGroups Man page Source code
dittoRidgePlot Man page Source code
dittoScatterPlot Man page Source code
dittoSeq Man page
gene Man page Source code
getGenes Man page Source code
getMetas Man page Source code
getReductions Man page Source code
importDESeq2 Man page Source code
importDemux2Seurat Man page Source code
importEdgeR Man page Source code
isGene Man page Source code
isMeta Man page Source code
meta Man page Source code
meta.levels Man page Source code
multi_dittoDimPlot Man page Source code
multi_dittoDimPlotVaryCells Man page Source code
multi_dittoPlot Man page Source code
dtm2451/DittoSeq documentation built on Nov. 16, 2019, 10:53 p.m.