demuxlet.example: demuxlet.example

In dtm2451/dittoSeq: User Friendly Single-Cell and Bulk RNA Sequencing Visualization

demuxlet.example

Description

A dataframe containing mock demuxlet information for the 80-cell Seurat::pbmc_small dataset

Usage

demuxlet.example

Format

An object of class data.frame with 80 rows and 7 columns.

Details

This data was created based on the structure of real demuxlet.best output files. Barcodes from Seurat's pbmc_small example data were used as the BARCODES column. Cells were then assigned randomly as either SNG (singlets), DBL (doublets), or AMB (ambiguous). Cells were then randomly assign to sample1-10 (or multiple samples for doublets), and this information was combined using the paste function into the typical structure of a demuxlet CALL column. Random sampling of remaining data from a separate, actual, demuxlet daatset was used for remaining columns.

Value

A dataframe

Note

This is a slightly simplified example. Real demuxlet.best data has additional columns.

Author(s)

Daniel Bunis

dtm2451/dittoSeq documentation built on May 5, 2024, 11:19 a.m.