setBulk: Set whether a SingleCellExperiment object should be treated...

In dtm2451/dittoSeq: User Friendly Single-Cell and Bulk RNA Sequencing Visualization

Set whether a SingleCellExperiment object should be treated as bulk versus single-cell by dittoSeq

Description

Set whether a SingleCellExperiment object should be treated as bulk versus single-cell by dittoSeq

Usage

setBulk(object, set = TRUE)

## S4 method for signature 'SingleCellExperiment'
setBulk(object, set = TRUE)

Arguments

object	A target SingleCellExperiment object
set	Logical, whether the object should be considered as bulk (TRUE) or not (FALSE)

Value

A SingleCellExperiment object with "bulk" internal metadata set to set

Examples

example(importDittoBulk, echo = FALSE)
myRNA

isBulk(myRNA)

scRNA <- setBulk(myRNA, FALSE)
isBulk(scRNA)

# Now, if we make a heatmap with this data, we will see that single-cell
# defaults (ordering by the first 'annot.by' & cell names not shown) are used.
dittoHeatmap(scRNA, getGenes(scRNA)[1:30],
    annot.by = c("clustering", "groups"),
    main = "isBulk(object) == FALSE")

dtm2451/dittoSeq documentation built on May 5, 2024, 11:19 a.m.