wu_subset: Small subset of Wu barcoding dataset
In dunbarlabNIH/barcodetrackR: Functions for Analyzing Cellular Barcoding Data
Description
Usage
Format
Source
Description
A SummarizedExperiment object containing a subset of the Wu barcoding dataset.
It includes peripheral blood T, B, Gr, NK_56, and NK-16 samples from the first
4 times points of macaque ZJ31.
Usage
1
Format
A SummarizedExperiment object with 215 features rows and 20 samples:
- assays
includes the counts, proportions, ranks, normalized, and logs assays
- colData
includes the accompanying metadata for the samples
- metadata
includes the scale_factor used and the log_base used in the log assay
...
Source
system.file("sample_data/WuC_etal/monkey_ZJ31.txt", package = "barcodetrackR")
system.file("sample_data/WuC_etal/monkey_ZJ31_metadata.txt", package = "barcodetrackR")
wu_SE <- create_SE(your_data = wu_dataframe, meta_data = wu_metadata, threshold = 0.005)
wu_subset <- wu_SE[,1:20]
http://dx.doi.org/10.1126/sciimmunol.aat9781
dunbarlabNIH/barcodetrackR documentation built on April 26, 2021, 6:20 p.m.
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Description Usage Format Source
Description
A SummarizedExperiment object containing a subset of the Wu barcoding dataset. It includes peripheral blood T, B, Gr, NK_56, and NK-16 samples from the first 4 times points of macaque ZJ31.
Usage
1 |
Format
A SummarizedExperiment object with 215 features rows and 20 samples:
- assays
includes the counts, proportions, ranks, normalized, and logs assays
- colData
includes the accompanying metadata for the samples
- metadata
includes the scale_factor used and the log_base used in the log assay
...
Source
system.file("sample_data/WuC_etal/monkey_ZJ31.txt", package = "barcodetrackR") system.file("sample_data/WuC_etal/monkey_ZJ31_metadata.txt", package = "barcodetrackR") wu_SE <- create_SE(your_data = wu_dataframe, meta_data = wu_metadata, threshold = 0.005) wu_subset <- wu_SE[,1:20] http://dx.doi.org/10.1126/sciimmunol.aat9781
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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