wu_subset: Small subset of Wu barcoding dataset

Description Usage Format Source

Description

A SummarizedExperiment object containing a subset of the Wu barcoding dataset. It includes peripheral blood T, B, Gr, NK_56, and NK-16 samples from the first 4 times points of macaque ZJ31.

Usage

1

Format

A SummarizedExperiment object with 215 features rows and 20 samples:

assays

includes the counts, proportions, ranks, normalized, and logs assays

colData

includes the accompanying metadata for the samples

metadata

includes the scale_factor used and the log_base used in the log assay

...

Source

system.file("sample_data/WuC_etal/monkey_ZJ31.txt", package = "barcodetrackR") system.file("sample_data/WuC_etal/monkey_ZJ31_metadata.txt", package = "barcodetrackR") wu_SE <- create_SE(your_data = wu_dataframe, meta_data = wu_metadata, threshold = 0.005) wu_subset <- wu_SE[,1:20] http://dx.doi.org/10.1126/sciimmunol.aat9781


dunbarlabNIH/barcodetrackR documentation built on April 26, 2021, 6:20 p.m.