scatter_plot: Scatter Plot

In dunbarlabNIH/barcodetrackR: Functions for Analyzing Cellular Barcoding Data

Description

Plots a scatter plot of two samples in the Summarized Experiment object

Usage

scatter_plot(
  your_SE,
  assay = "proportions",
  plot_labels = colnames(your_SE),
  method_corr = "pearson",
  display_corr = TRUE,
  point_size = 0.5,
  your_title = "",
  text_size = 12
)

Arguments

your_SE	A Summarized Experiment object of two samples.
assay	The choice of assay to plot on the scatter plot. Set to "proportions" by default.
plot_labels	The labels for the X and Y axis of the plot
method_corr	Character. One of "pearson", "spearman", or "kendall". Can also use "manhattan" to compute manhattan distance instead.
display_corr	Logical. Whether to display the computer correlation or not.
point_size	Numeric. The size of the points being plotted.
your_title	Logical. The title for the plot.
text_size	Numeric. Size of text in plot.

Value

Displays a scatter plot of the specified assay for the specified samples in your_SE with correlation value optionally displayed.

Examples

data(wu_subset)
scatter_plot(your_SE = wu_subset[, c(4, 8)])
# "

dunbarlabNIH/barcodetrackR documentation built on April 26, 2021, 6:20 p.m.