Description Usage Arguments Examples
Remove secondary alignments from a pafr alignment
1 | filter_secondary_alignments(ali, remove_inversions = FALSE)
|
ali |
Genomic alignment in |
remove_inversions |
logical If TRUE, also remove inversions (tp flag 'I' or 'i') from the alignment |
1 2 3 | ali <- read_paf( system.file("extdata", "fungi.paf", package="pafr") )
ali
filter_secondary_alignments(ali)
|
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