read_bed: Read genomic intervals in bed format
In dwinter/pafr: Read, Manipulate and Visualize 'Pairwise mApping Format' Data

Description Usage Arguments Details Value Examples

The first three columns of the file specified by file_name must contain data in the standard bed format (i.e., a genomic interval represented by 0-based half-open interval with seq-id, start and end position). These columns will be renamed to 'chrom', 'start' and 'end', respectively. Any other columns present in the data will be left unmodified.

1	read_bed(file_name, tibble = FALSE, ...)

`file_name`	Path to the bed file to be read in
`tibble`	logical If TRUE, the genomic intervals are returned as a tidy `tbl_df`.
`...`	Other arguments passed to `read.table`

The file is read into memory with read.table, with the argument sep set to '\t' and stringsAsFactors set to FALSE. All other arguments are left as default, but arguments can be passed from read_bed to read.table.

Either a data.frame or a tbl_df with at least three columns named 'chrom', 'start' and 'end'

bed_path <- system.file("extdata", "Q_centro.bed", package="pafr")
centro <- read_bed(bed_path)
centro
# Can pass arguments to read.table
miss_two <- read_bed(bed_path, skip=2)
miss_two