rm_to_bed12: Convert an rm_table to bed12 format

Description Usage Arguments Value

View source: R/IO.r

Description

Convert an rm_table to bed12 format

Usage

1
rm_to_bed12(rm_table, score = c("p_sub", "p_del", "p_ins", "score"))

Arguments

rm_table

a repeat masker outout table, as returend by read_rm

score

which column to use for the bed "score" attribute (one of p_sub (default), p_del, p_ins or score).

Value

A 12 column with one row per alignment (even for split/nested repeats)


dwinter/repeatR documentation built on April 2, 2021, 7:31 p.m.