permute_popgraph: Bootstraps individuals to see stability of graph topology.

In dyerlab/popgraph: This is an R package that constructs and manipulates population graphs

Bootstraps individuals to see stability of graph topology.

Description

This function uses a permutation test to look at edge stability. What we do is resample individuals and re-estimate the topology several times. This provides an estimate of edge stability.

Usage

permute_popgraph(data, groups, nboot = 50, ...)

Arguments

data	The raw multivariate data as submitted to popgraph
groups	The grouping of the data into nodes as submitted to popgraph
nboot	The nubmer of times to bootstrap the individuals per group (default=50)
...	Other arguments to be passed to popgraph

Value

A weighted graph where edge weights represent the proportion of times the edge was found in the perumuted data sets.

dyerlab/popgraph documentation built on July 22, 2022, 5:42 p.m.