Files in dynamic-R/RTM

Reaction Transport Modelling: Course Tutorials and Exercises

R/RTMtutorial.R README.md inst/exercises/R/introductionR/Rmarkdown_small.Rmd inst/exercises/R/introductionR/introductionR.Rmd inst/exercises/R/introductionR/introductionR.pdf inst/exercises/R/introductionR/introductionR_A.Rmd inst/exercises/R/introductionR/introductionR_Q.Rmd inst/exercises/biogeochemistry/crops_weed/crops_weed.Rmd inst/exercises/biogeochemistry/crops_weed/crops_weed_A.Rmd inst/exercises/biogeochemistry/crops_weed/crops_weed_A_econ.Rmd inst/exercises/biogeochemistry/crops_weed/crops_weed_Q.Rmd inst/exercises/biogeochemistry/detritus/detritus.Rmd inst/exercises/biogeochemistry/detritus/detritus_A.Rmd inst/exercises/biogeochemistry/detritus/detritus_Q.Rmd inst/exercises/biogeochemistry/npzd/npzd.Rmd inst/exercises/biogeochemistry/npzd/npzd2_A.Rmd inst/exercises/biogeochemistry/npzd/npzd_A.Rmd inst/exercises/biogeochemistry/npzd/npzd_Q.Rmd inst/exercises/chemistry/dissolutionSi/dissolutionSi.Rmd inst/exercises/chemistry/dissolutionSi/dissolutionSi_A.Rmd inst/exercises/chemistry/dissolutionSi/dissolutionSi_Q.Rmd inst/exercises/chemistry/equilibriumHCO3/ed072p799.pdf inst/exercises/chemistry/equilibriumHCO3/equilibriumHCO3.Rmd inst/exercises/chemistry/equilibriumHCO3/equilibriumHCO3_A.Rmd inst/exercises/chemistry/equilibriumHCO3/equilibriumHCO3_Q.Rmd inst/exercises/chemistry/equilibriumNH3/equilibriumNH3.Rmd inst/exercises/chemistry/equilibriumNH3/equilibriumNH3_A.Rmd inst/exercises/chemistry/equilibriumNH3/equilibriumNH3_Q.Rmd inst/exercises/chemistry/equilibriumOMD/equilibriumOMD.Rmd inst/exercises/chemistry/equilibriumOMD/equilibriumOMD_A.Rmd inst/exercises/chemistry/equilibriumOMD/equilibriumOMD_Q.Rmd inst/exercises/chemistry/ozone/ozone.Rmd inst/exercises/chemistry/ozone/ozone_A.Rmd inst/exercises/chemistry/ozone/ozone_Q.Rmd inst/exercises/ecology/bears_salmon/bears_salmon.Rmd inst/exercises/ecology/bears_salmon/bears_salmon_A.Rmd inst/exercises/ecology/bears_salmon/bears_salmon_Q.Rmd inst/exercises/ecology/hyacinth_algae/hyacinth_algae.Rmd inst/exercises/ecology/hyacinth_algae/hyacinth_algae_A.Rmd inst/exercises/ecology/hyacinth_algae/hyacinth_algae_Q.Rmd inst/exercises/ecology/plant_coexistence/plant_coexistence.Rmd inst/exercises/ecology/plant_coexistence/plant_coexistence_A.Rmd inst/exercises/ecology/plant_coexistence/plant_coexistence_Q.Rmd inst/exercises/epidemiology/covid/covid.Rmd inst/exercises/epidemiology/covid/covid_A.Rmd inst/exercises/epidemiology/covid/covid_Q.Rmd inst/exercises/epidemiology/covid/covid_appendix.Rmd inst/exercises/epidemiology/virus/virus.Rmd inst/exercises/epidemiology/virus/virus_A.Rmd inst/exercises/epidemiology/virus/virus_Q.Rmd inst/exercises/individualbased/aquaculture/aquaculture.Rmd inst/exercises/individualbased/aquaculture/aquaculture_A.Rmd inst/exercises/individualbased/aquaculture/aquaculture_Q.Rmd inst/exercises/isotopes/O18exchange/O18exchange.Rmd inst/exercises/isotopes/O18exchange/O18exchange_A.Rmd inst/exercises/isotopes/O18exchange/O18exchange_Q.Rmd inst/exercises/isotopes/O18exchange/liquid_vapor.pdf inst/exercises/isotopes/O18exchange/water_reservoirs.pdf inst/exercises/isotopes/SIP_agaricus/SIP_agaricus.Rmd inst/exercises/isotopes/SIP_methanotrophy/SIP_methanotrophy.Rmd inst/exercises/isotopes/evaporation/evaporation.Rmd inst/exercises/isotopes/evaporation/evaporation_A.Rmd inst/exercises/isotopes/evaporation/evaporation_Q.Rmd inst/exercises/isotopes/evaporation/liquid_vapor.pdf inst/exercises/linearmodels/carbonCycle/carbonCycle.Rmd inst/exercises/linearmodels/carbonCycle/carbonCycle_A.Rmd inst/exercises/linearmodels/carbonCycle/carbonCycle_Q.Rmd inst/exercises/massbalance/conceptual/conceptual.Rmd inst/exercises/massbalance/conceptual/conceptual_A.Rmd inst/exercises/massbalance/conceptual/conceptual_Q.Rmd inst/exercises/massbalance/massbalance_chemistry/massbalance_chemistry.Rmd inst/exercises/massbalance/massbalance_chemistry/massbalance_chemistry_A.Rmd inst/exercises/massbalance/massbalance_chemistry/massbalance_chemistry_Q.Rmd inst/exercises/massbalance/massbalance_ecology/massbalance_ecology.Rmd inst/exercises/massbalance/massbalance_ecology/massbalance_ecology_A.Rmd inst/exercises/massbalance/massbalance_ecology/massbalance_ecology_Q.Rmd inst/exercises/reaction_transport/Pdiagenesis/Pdiagenesis.Rmd inst/exercises/reaction_transport/Pdiagenesis/Pdiagenesis_A.Rmd inst/exercises/reaction_transport/Pdiagenesis/Pdiagenesis_Q.Rmd inst/exercises/reaction_transport/diagenesis/diagenesis.Rmd inst/exercises/reaction_transport/diagenesis/diagenesis_A.Rmd inst/exercises/reaction_transport/diagenesis/diagenesis_Q.Rmd inst/exercises/reaction_transport/estuaryAnoxia/estuaryAnoxia.Rmd inst/exercises/reaction_transport/estuaryAnoxia/estuaryAnoxia_A.Rmd inst/exercises/reaction_transport/estuaryAnoxia/estuaryAnoxia_Q.Rmd inst/paper/RTM_paper.Rmd inst/paper/RTM_paper.pdf inst/paper/images/SIR-0D.Rmd inst/paper/images/template-0D.Rmd inst/paper/images/template_solution.pdf inst/paper/images/template_solution2.pdf inst/paper/images/tutorial_qanda.pdf inst/readers/events.Rmd inst/readers/fitting.Rmd inst/readers/forcings.Rmd inst/readers/git_sharing_code.Rmd inst/readers/interactive.Rmd inst/readers/interactive2.Rmd inst/readers/interactive_1D.Rmd inst/readers/numericalR.Rmd inst/readers/observations.Rmd inst/readers/pHprofiles.Rmd inst/readers/perturbation_I.Rmd inst/readers/perturbation_II.Rmd inst/readers/visualisation.Rmd inst/report_template/discussion.Rmd inst/report_template/introduction.Rmd inst/report_template/methods.Rmd inst/report_template/references.Rmd inst/report_template/report_main.Rmd inst/report_template/results.Rmd inst/rmarkdown/templates/npzd/skeleton/skeleton.Rmd inst/rmarkdown/templates/porous1D/skeleton/skeleton.Rmd inst/rmarkdown/templates/porous1D_extensive/skeleton/skeleton.Rmd inst/rmarkdown/templates/rmarkdown_small/skeleton/skeleton.Rmd inst/rmarkdown/templates/rtm0D/skeleton/skeleton.Rmd inst/rmarkdown/templates/rtm1D/skeleton/skeleton.Rmd inst/rmarkdown/templates/rtmEquilibrium/skeleton/skeleton.Rmd inst/tutorials/01introduction/introduction.Rmd inst/tutorials/02why/why.Rmd inst/tutorials/03conceptual/conceptual.Rmd inst/tutorials/04massbalance/massbalance.Rmd inst/tutorials/05Rmodels/Rmodels.Rmd inst/tutorials/06largescale/largescale.Rmd inst/tutorials/07chemical/chemical.Rmd inst/tutorials/08equilibrium/equilibrium.Rmd inst/tutorials/09enzymatic/enzymatic.Rmd inst/tutorials/10partitioning/partitioning.Rmd inst/tutorials/11ecology/ecology.Rmd inst/tutorials/12transportProcesses/transportProcesses.Rmd inst/tutorials/13transportFluxes/transportFluxes.Rmd inst/tutorials/14transportPorous/transportPorous.Rmd inst/tutorials/15transportBoundaries/transportBoundaries.Rmd inst/tutorials/16transportR/transportR.Rmd vignettes/RTM.Rmd