Files in dynverse/dyngen
A Multi-Modal Simulator for Spearheading Single-Cell Omics Analyses
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yml
.github/workflows/docker_build.yml
.github/workflows/pkgdown.yaml
.github/workflows/test_coverage.yml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/0a_backbone.R
R/0b_modnet_pieces.R
R/0c_backbone_lego.R
R/0d_backbones.R
R/1_initialisation.R
R/2_tf_network.R
R/3_feature_network.R
R/4_kinetics.R
R/5_gold_standard.R
R/6_simulation.R
R/7_experiment.R
R/8_convert.R
R/caching.R
R/colour_brighten.R
R/combine_models.R
R/data-example_model.R
R/data-realnet.R
R/dimred.R
R/generate_dataset.R
R/generate_partitions.R
R/ggforce_issue_273_workaround.R
R/package.R
R/plotting.R
R/random_generators.R
R/reexports.R
R/simtime_from_backbone.R
R/timings.R
README.Rmd
README.md
_pkgdown.yml
cran-comments.md
data-raw/data_files.R
data-raw/example_model.R
data/example_model.rda
data/realcounts.rda
data/realnets.rda
docker/Dockerfile
docker/README.md
docker/getting_started.R
dyngen.Rproj
inst/CITATION
man/backbone.Rd
man/backbone_models.Rd
man/bblego.Rd
man/combine_models.Rd
man/convert.Rd
man/dyngen.Rd
man/example_model.Rd
man/figures/Arte_De_Athletica_2b.jpg
man/figures/logo.png
man/figures/logo.svg
man/figures/overview.png
man/generate_cells.Rd
man/generate_dataset.Rd
man/generate_experiment.Rd
man/generate_feature_network.Rd
man/generate_gold_standard.Rd
man/generate_kinetics.Rd
man/generate_tf_network.Rd
man/get_timings.Rd
man/initialise_model.Rd
man/kinetics_noise.Rd
man/plot_backbone_modulenet.Rd
man/plot_backbone_statenet.Rd
man/plot_experiment_dimred.Rd
man/plot_feature_network.Rd
man/plot_gold_expression.Rd
man/plot_gold_mappings.Rd
man/plot_gold_simulations.Rd
man/plot_simulation_expression.Rd
man/plot_simulations.Rd
man/plot_summary.Rd
man/realcounts.Rd
man/realnets.Rd
man/reexports.Rd
man/rnorm_bounded.Rd
man/runif_subrange.Rd
man/simtime_from_backbone.Rd
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
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pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
tests/testthat.R
tests/testthat/7_experiment.R
tests/testthat/test-1_initialisation.R
tests/testthat/test-2_backbone.R
tests/testthat/test-combine_models.R
tests/testthat/test-generate_dataset.R
tests/testthat/test-generate_partitions.R
vignettes/.gitignore
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