answer_questions: Provide answers to questions

Description Usage Arguments

View source: R/answers.R

Description

Provide answers to questions

Usage

1

Arguments

dataset

The dynwrap dataset object from which the answers will be computed

...

Answers to questions:

  • multiple_disconnected: Do you expect multiple disconnected trajectories in the data? defaults to NULL:

  • expect_topology: Do you expect a particular topology in the data? defaults to NULL:

  • expected_topology: What is the expected topology defaults to NULL:

  • expect_cycles: Do you expect cycles in the data? defaults to NULL:

  • expect_complex_tree: Do you expect a complex tree in the data? defaults to NULL:

  • n_cells: Number of cells defaults to 1000:

  • n_features: Number of features (genes) defaults to 1000:

  • time: Time limit defaults to 1h:

  • memory: Memory limit defaults to 30GB:

  • prior_information: Are you able to provide the following prior information? defaults to c("start_id", "end_id", "end_n", "start_n", "leaves_n", "groups_n", "features_id", "dimred"):

  • method_selection: How to select the number of methods defaults to dynamic_n_methods:

  • dynamic_n_methods: Minimal probability of selecting the top model for the task defaults to 80:

  • fixed_n_methods: Number of methods defaults to 4:

  • metric_importance: How important are the following aspects of the trajectory? defaults to list(correlation = 0.25, him = 0.25, featureimp_wcor = 0.25, F1_branches = 0.25):

  • user: Are you an end-user or a method developer? defaults to user:

  • dynmethods: Do you use dynmethods to run the methods? defaults to TRUE:

  • docker: Is docker installed? defaults to TRUE:

  • programming_interface: Can you work in a programming interface? defaults to TRUE:

  • languages: Which languages can you work with? defaults to c("Python", "R", "C++"):

  • user_friendliness: Minimal user friendliness score defaults to 60:

  • developer_friendliness: Minimal developer friendliness score defaults to 60:

  • exclude_datasets: Which datasets should be excluded defaults to character(0):


dynverse/dynguidelines documentation built on July 4, 2020, 9:09 p.m.