guidelines: Provide guidelines on which methods to use, optionally based...

In dynverse/dynguidelines: User guidelines for trajectory inference

Description

guidelines() immediately returns a set of guidelines. Use the answers arguments to provide answers guidelines_shiny() opens the shiny app

Usage

guidelines(dataset = NULL, answers = answer_questions(dataset = dataset))

guidelines_shiny(
  dataset = NULL,
  answers = answer_questions(dataset = dataset),
  port = NULL,
  launch.browser = TRUE,
  host = NULL,
  ...
)

Arguments

dataset	The dynwrap dataset object from which some of the answers will be precomputed
answers	A set answers generated by answer_questions()
port	The TCP port that the application should listen on. If the port is not specified, and the shiny.port option is set (with options(shiny.port = XX)), then that port will be used. Otherwise, use a random port.
launch.browser	If true, the system's default web browser will be launched automatically after the app is started. Defaults to true in interactive sessions only. This value of this parameter can also be a function to call with the application's URL.
host	The IPv4 address that the application should listen on. Defaults to the shiny.host option, if set, or "127.0.0.1" if not. See Details.
...	Other parameters given to shiny::runApp()

Value

Returns a dynguidelines::guidelines object, containing

• methods: Ordered tibble containing information about the selected methods

• method_columns: Information about what columns in methods are given and whether the were used for filtering or ordering

• methods_aggr: Same columns as methods, but includes filtered methods

• answers: An answers tibble, can be provided again to this function to reproduce the guidelines

• methods_selected: Ids for all selected methods, can be given to dynwrap::infer_trajectory()

dynverse/dynguidelines documentation built on July 4, 2020, 9:09 p.m.